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Publications

2018

GFBio Team (2018). The National Research Data Infrastructure (NFDI) - a Cornerstone for Biological and Biodiversity research. Position paper by the German Federation for Biological Data (GFBio). Link to PDF

Beilschmidt C, Drönner J, Fernández N, Langer C, Mattig M & Seeger B (2018). Towards an EBV Analyzer based on VAT. In: Gaikad J, König-Ries B & Recknagel F (eds). Proceedings 10th International Conference on Ecological Informatics: 182. Link to PDF

Güntsch A, Müller A, Plitzner P, Henning T, Kilian N, Fichtmüller D, Gleisberg M, Karam N, Müller-Birn C & Berendsohn W (2018). The EDIT Platform for Cybertaxonomy - an integrated software environment for biodiversity research data management. – In: Gaikad J, König-Ries B & Recknagel F (eds). Proceedings 10th International Conference on Ecological Informatics: 103–104. Link to PDF

Harjes J, Triebel D, Weibulat T, Link A & Rambold G (2018). Managing and publishing fungal community barcoding data by use of the process-oriented schema MOD-CO and a GFBio data publication pipeline. – In: Gaikad J, König-Ries B & Recknagel F (eds). Proceedings 10th International Conference on Ecological Informatics: 108–109. Link to PDF

Helbing F, Astor T & Nieschulze J (2018). Diverse Users, Varying Skills, Tailored Support - The GFBio Training Approach. Göttingen-CODATA RDA Symposium 2018. Link to PDF

Triebel D, Reichert W, Bosert S, Feulner M, Osieko Okach D, Slimani A & Rambold G (2018). A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing. Database 2018, Issue 1: bax096. doi.org/10.1093/database/bax096

Weiss M, Weibulat T, Seifert S, Monje JC, Ruff M, Neubacher D, Reichert W & Triebel D (2018). A flexible Diversity Workbench tool to publish biodiversity data from SQL database networks through platforms like GFBio. – In: Gaikad J, König-Ries B & Recknagel F (eds). Proceedings 10th International Conference on Ecological Informatics: 106–107. Link to PDF

2017

Beilschmidt C, Fober T, Mattig M & Seeger B (2017). A Linear-Time Algorithm for the Aggregation and Visualization of Big Spatial Point Data. SIGSPATIAL/GIS 2017: 73:1-73:4. doi.acm.org/10.1145/3139958.3140037

Beilschmidt C, Drönner J, Mattig M, Schmidt M, Authmann C, Niamir A, Hickler T & Seeger B (2017). VAT: A Scientific Toolbox for Interactive Geodata Exploration. Datenbank-Spektrum 17(3): 233-243. doi.org/10.1007/s13222-017-0266-5

Beilschmidt C, Fober T, Mattig M & Seeger B (2017). Quality Measures for Visual Point Clustering in Geospatial Mapping. W2GIS 2017: 153-168. doi.org/10.1007/978-3-319-55998-8_10

Beilschmidt C, Drönner J, Mattig M & Seeger B (2017). VAT: A System for Data-Driven Biodiversity Research. EDBT 2017: 546-549. doi.org/10.5441/002/edbt.2017.66

Beilschmidt C, Drönner J, Mattig M, Schmidt M, Authmann C, Niamir A, Hickler T & Seeger B (2017). Interactive Data Exploration for Geoscience. BTW Workshops 2017: 117-126. dl.gi.de/20.500.12116/903

Fichtmueller D, Gleisberg M, Karam N, Müller-Birn C & Güntsch A (2017). Terminologies as a neglected part of research data: Making supplementary research data available through the GFBio Terminology Service, In: Proceedings of the 2nd International Workshop on Semantics for Biodiversity co-located with 16th International Semantic Web Conference (ISWC 2017), October 2017, Vienna, Austria. Link to PDF

König-Ries B, Triebel D, Huber R, Glöckler F, Güntsch A, Felden J, Löffler F & Hoffmann J (2017). Setting up an Interdisciplinary Data Infrastructure: Why Cooperation between Domain Experts and Computer Scientists Matters - An Experience Report from the GFBio Project. Biodiversity Information Science and Standards 1: e20198. doi.org/10.3897/tdwgproceedings.1.20198 (Conference abstract)

Löffler F, Pfaff C-T, Karam N, Fichtmüller D & Klan F (2017). What do Biodiversity Scholars Search for? Identifying High-Level Entities for Biological Metadata. Proceedings of the 2nd International Workshop on Semantics for Biodiversity co-located with 16th International Semantic Web Conference (ISWC 2017), October 2017, Vienna, Austria. Link to PDF

Löffler F, Opasjumruskit K, Karam N, Fichtmüller D, Schindler U, Klan F, Müller-Birn C & Diepenbroek M (2017). Honey Bee Versus Apis Mellifera: A Semantic Search for Biological Data. Blomqvist E, Hose K, Paulheim H, Ławrynowicz A, Ciravegna F & Hartig O (eds) The Semantic Web: ESWC 2017 Satellite Events. ESWC 2017. Lecture Notes in Computer Science, vol 10577. Springer doi:10.1007/978-3-319-70407-4_19

2016

Glöckner FO & Tauch A (2016). de.NBI und GFBio - Bioinformatische Infrastrukturen zum Management und zur Analyse großer biologischer Datenmengen in den Lebenswissenschaften. Labor&More 02/2016. Link to article

Karam N, Müller-Birn C, Gleisberg M, Fichtmüller D, Tolksdorf R, & Güntsch A (2016). A Terminology Service Supporting Semantic Annotation, Integration, Discovery and Analysis of Interdisciplinary Research Data. Datenbank-Spektrum 16(3): 195-205. doi.org/10.1007/s13222-016-0231-8

Löffler F & Klan F (2016). Does Term Expansion Matter for the Retrieval of Biodiversity Data? Joint Proceedings of the Posters and Demos Track of the 12th International Conference on Semantic Systems. SEMANTiCS2016 and the 1st International Workshop on Semantic Change & Evolving Semantics (SuCCESS'16), co-located with the 12th International Conference on Semantic Systems (SEMANTiCS 2016). Link to PDF, Link to publication website with supplementary material

2015

Authmann C, Beilschmidt C, Drönner J, Mattig M & Seeger B (2015). VAT: A System for Visualizing, Analyzing and Transforming Spatial Data in Science. Datenbank-Spektrum 15(3): 175-184. doi:10.1007/s13222-015-0197-y

Authmann C, Beilschmidt C, Drönner J, Mattig M & Seeger B (2015). Rethinking Spatial Processing in Data-Intensive Science. BTW Workshops 2015: 161-170. dl.gi.de/20.500.12116/2380

Diepenbroek M (2015). Orientierung im Datenmeer – Infrastruktur für Umwelt- und Ökosystemdaten. Editorial BIOspektrum 21(5): 467. doi.org/10.1007/s12268-015-0601-z, Link to PDF

2014


Authmann C, Beilschmidt C, Drönner J, Mattig M & Seeger B (2014). Analytical Workflows for Large Data. TDWG 2014 Symposium: Biodiversity Informatics. Link to conference abstract

Diepenbroek M, Glöckner F, Grobe P, Güntsch A, Huber R, König-Ries B, Kostadinov I, Nieschulze J, Seeger B, Tolksdorf R, & Triebel D (2014). Towards an Integrated Biodiversity and Ecological Research Data Management and Archiving Platform: The German Federation for the Curation of Biological Data (GFBio). Plödereder E, Grunske L, Schneider E & Ull D (eds): Informatik 2014 – Big Data Komplexität meistern. GI-Edition: Lecture Notes in Informatics (LNI) – Proceedings 232: 1711-1724. Köllen Verlag, Bonn. Link to PDF

Löffler F, Sateli B, Witte R & König-Ries B (2014): Towards Semantic Recommendation of Biodiversity Datasets based on Linked Open Data. Specht G, Gamper H & Klan F (eds.): Proceedings of the 26th GI Workshop on Foundations of Databases (Grundlagen von Datenbanken), 21.10.2014 - 24.10.2014, Bozen, Italy. Link to PDF