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de.NBI/GFBio Summer School on Data Management

Welcome to the GFBio - de.NBI Summer School 2018 Riding the Data Life Cycle! Braunschweig Integrated Centre of Systems Biology (BRICS), 03 - 07 September 2018

 

The Ger­man Fed­er­a­tion for Bio­lo­gical Data (GFBio) and the Ger­man Net­work for Bioin­form­at­ics In­fra­struc­ture (de.NBI) pro­mot­ed for the first time  a joint sum­mer school to sup­port re­search­ers in man­aging their sci­entific data. 18 young sci­ent­ists met at the Braun­sch­weig Centre for Sys­tems Bio­logy from 03 to 07 September 2018 to attend Rid­ing the Data Life Cycle, a title that refers to the OECD re­com­mend­a­tion that data from pub­licly fun­ded re­search must be pub­licly avail­able.

The aim of the summer school was to provide a prac­tical tool­box for the col­lec­tion, main­ten­ance, doc­u­ment­a­tion, archiv­ing and pub­lic­a­tion of re­search data ac­cord­ing to the FAIR data prin­ciples (Find­able, Ac­cess­ible, In­ter­op­er­able and Re-us­able). Prac­tical train­ing was also in­teg­rated to eval­u­ate data for re­use.

 


The GFBio Data Management Plan Tool is OUT!

With this service, GFBio aims at supporting individual researchers, research groups, and large projects to develop and implement effective data management strategies for FAIR (Findable, Accessible, Interoperable, and Re-usable) data as part of good scientific practice

 

The new GFBio Data Management Plan Tool (DMPT) is available from July 19, 2018. By adding this tool to the services' portfolio, GFBio can directly help you to prepare your personal data management plan.

After submitting the DMPT questionnaire, you immediately connect with our data management experts. They are able to identify suitable data archives for your data, give you advice concerning data management policies and data access rules, estimate data management costs and efforts, and provide a roadmap for the long-term availability of your data. Furthermore, GFBio offers reviewing of your DMP regarding any special requirements of your funding agency.

By writing a Data Management Plan (DMP) you save a lot of time in the long run; to begin with, you create awareness of potential data management obstacles. In fact, a well-structured DMP clarifies how and what data will be created, processed and documented. It also refers means of data archiving and publication regarding costs and access conditions. In short, the DMP helps you asking the right questions concerning data management, and is likely to enhance the transparency and the integrity of your work. In addition, DMPs are increasingly required as mandatory proposal part by research institutions and funding agencies.

We have developed the DMPT for individual scientists (during all stages of their career), research groups, and for large research projects – you can use the tool to send your DMP to our experts for support and revision; save your personal DMP and come back to it later; or create a pdf version of your work to print out. You choose!

Do have a look at our training materials if you want to learn more about data management planning and don't hesitate to contact us at info[at]gfbio.org in case of any question.

We are looking forward to helping you with your DMP!


GFBio Retreat in Erfurt - we are ready for the third phase!

Erfurt, June 13-15, 2018 – the annual GFBio Retreat took place, for the first time bringing together the GFBio Steering Committee & the Strategic Advisory Board.

This year’s GFBio Retreat joined the GFBio Steering Committee and the Strategic Advisory Board in a collaborative forum to present and discuss ideas on specific needs, gaps, and opportunities to establish GFBio as a permanent infrastructure network.

Particular focus was set on how to foster a successful participation in the National Data Infrastructure (NFDI) and optimize the existing service lines. Discussion on how to advance a strategy and high-level tactics to increase the visibility of GFBio within the scientific community, culminated with establishing a list of practical actions to achieve that goal.

The retreat revealed highly beneficial for an open assessment of internal capabilities and performance, and laid a roadmap to effectively move GFBio through the third phase (starting in August 2018) and beyond.

Let the third phase begin!

 


Press Release: DFG funds the national contact point for scientific data management through 2021

The German Federation for Biological Data (GFBio) supports scientists in research-data management

 

Data provide the foundation for empirical science. Datasets are also becoming more expansive and complex in the field of environmental sciences. At the same time, however, they are opening up new possibilities, for example, when older datasets are applied in combination with new analytical tools. The German Federation for Biological Data (GFBio) project, funded by the German Research Foundation (DFG – Deutsche Forschungsgemeinschaft), and coordinated at MARUM – Center for Marine Environmental Sciences at the University of Bremen, will improve the management of research data and enhance the exchange of data among researchers. Starting in August, the DFG will fund the third phase of the project with around 4.3 million Euros.

 

“GFBio helps to solve a central problem of current research: to make research data accessible over the long term and to enable better science,” says Dr. Michael Diepenbroek, manager of the PANGAEA data center where the GFBio project is coordinated. “We bring together collection, genome, and environmental data. This represents a great potential for science.” Through the search function in the portal almost 5.5 million data entries are already available to scientists for use in their research from the eight affiliated GFBio data centers.

 

Data from publicly financed research should be widely and freely accessible, both the raw data produced during the research process itself, as well as the metadata, which describe the conditions and procedures that were used to obtain the data. This is where the GFBio project comes in. 19 partners from throughout Germany participate in the project, including universities, museums, and molecular-biological archives. The project participants are committed to the principles of "FAIR Data". In this context, FAIR stands for “Findable, Accessible, Interoperable, and Re-usable”.

 

GFBio serves as a national contact, information and consulting center for all questions concerning the standardization and management of biological research data throughout the entire life cycle of the data, i.e., from data collection and archiving to publication. During the conception and implementation phase of the project, the data portal www.gfbio.org was created. The third phase, which begins in the summer, will be primarily dedicated to improving the services offered in cooperation with the scientists, and to building a sustainable research data infrastructure. To furnish this process with a legal structure, the non-profit organization GFBio e.V. was also established.

 

The total funding amount for the coming three years is 4,370,000 Euros. In MARUM at the University of Bremen the entire project has been coordinated since the beginning of the first funding phase in 2013. This means that the data are published and that environmental data are better connected to molecular data.

 

Additional information:

www.gfbio.org

https://twitter.com/GFBio_Project

Contact:

Dr. Michael Diepenbroek

PANGAEA Manager

GFBio Coordinator 

Telephone: 0421 218 65590

Email: mdiepenbroek@pangaea.de

 

U.Prange

MARUM Press and Public Relations

Telephone:0421 218 65540

Email: medien@marum.de

 

The “German Federation for Biological Data” (GFBio) project has been funded by the German Research Foundation since 2013 and it presently has 19 scientific partners. As an infrastructure, GFBio addresses the research data management requirements in the areas of biological and environmental data from research institutes, individual researchers, German natural history museums, developers of scientific software, and from large research projects, groups and networks. The services offered by GFBio cover the complete life cycles of data from the collection of raw data to the publication of scientific articles. Additionally, researchers are supported in the preparation of data-management plans, which have become an obligatory part of research proposals in many fields. Here, GFBio acts as a central contact point for the long-term archiving of biological and environmental data. Datasets submitted to the GFBio are deposited in one or more of the eight data centers and linked with one another through so-called “persistent identifiers” (for example, DOIs – “digital object identifier”). In order to ensure the necessary performance of its tasks beyond the project period, the registered non-profit organization GFBio e.V. was established in 2016 as a legal entity and central point of contact.

 

PANGAEA is operated by the Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung (AWI) and MARUM – Center for Marine and Environmental Sciences at the University of Bremen. PANGAEA is open for any project, institution or individual researcher who uses, archives or publishes data. The PANGAEA information system is an open-access library that archives, publishes and distributes environmental and biodiversity data from Earth-system research. Most of the data, depending on licensing and moratorium restrictions within certain research fields, are openly and freely available.

 

Using state-of-the-art methods and through participation in international projects, MARUM investigates the role of the ocean in the Earth’s system, particularly with respect to global change. It quantifies the interactions between geological and biological processes in the ocean and contributes to the sustainable use of the oceans. MARUM comprises the DFG Research Centre and the Excellence Cluster “The Oceans in the Earth System”.


New title under the auspices of GFBio

DATABASE issue from January featuring article by Dagmar Triebel and coworkers

 

“A generic workflow for effective sampling of environmental vouchers with UUID assignment and image processing” is the latest article published with the support of the GFBio project. The authors present a workflow for sampling biological and environmental vouchers in the field, while simultaneously generating universally identifiable data. GFBio importance is highlighted as counsellor and facilitator towards data management best practices.

Enjoy your reading!


After riding the wave, it is time to navigate through the data jungle

The Evolving Landscape of Federated Research Data Infrastructures: a report with the contribution of GFBio

GFBio has contributed to the recently published Knowledge Exchange (KE) report about the evolving landscape of Federated Research Data Infrastructures (FRDI). This document draws from the work by the Knowledge Exchange Research Data expert group which recognized the need of better understanding the dynamics/consequences of ‘federating’ research data infrastructures. It also follows the KE report from 2011 elaborated in response to the European Commission ‘Riding the wave’ call for the development of an international framework towards a collaborative data infrastructure.

The report is based on a collection of interviews with experts leading or managing sixteen FRDI's in all six KE partner countries i.e. Denmark, Finland, France, Germany, the Netherlands and the UK (table 1).

The analysis of such interviews provided nine main conclusions relatively to a variety of factors: definition, characteristics, and drivers for the emergency of FRDIs, funding situation, users role, complexity of research environments, challenges and impacts, and the importance of the European Open Science Cloud (EOSC).

This study, authored by Stéphane Goldstein, is available since November 2017. It surely adds momentum to the transition towards data driven research and is a good starting point for anyone interested in understanding the present motivation in pushing forward a federated data infrastructure and implications thereof.


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